Stem-loop cas-MIR162b

Accession

MI0037249

Description

Camelina sativa cas-MIR162b precursor miRNA

Sequence

gcaagcgcuggaugcagagguuuaucgaucgauucgugcuuucgauguaacucucuuuuuuuuuuuucuuuaacaucgaaauuaaacaaaagaauuucccaggaauugAUCGAUGAACCGCUGCCUCCagcgacuuca
(.((((((((((.((((.(((((((((((((((((.((.(((((((((........................)))))))))..................)).))))))))))))))))).)))).))))))).)))).

Structure

- c   -       u    a                 g  -----------------c         aacucucuuuu 
 g aag cgcugga gcag gguuuaucgaucgauuc ug                  uuucgaugu           u
 | ||| ||||||| |||| ||||||||||||||||| ||                  |||||||||            
 c uuc gcgaCCU CGUC CCAAGUAGCUAguuaag ac                  aaagcuaca           u
a -   a       C    G                 g  ccuuuaagaaaacaaauu         auuucuuuuuu 

Annotation confidence Not enough data

Genome context

chr20: 13153737-13153874 [+]

Mature cas-miR162b

• Accession: MIMAT0045372
• Description: Camelina sativa cas-miR162b mature miRNA
• Sequence: 109 - AUCGAUGAACCGCUGCCUCC - 128
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542