Stem-loop cas-MIR395d

Accession

MI0037223

Description

Camelina sativa cas-MIR395d precursor miRNA

Literature search

1 open access papers mention cas-MIR395d
(1 sentences)

Sequence

ucuagaGUUCUCCCGAACACUUCAUUGgaaauauguuauucuuauuagcuaacauuuaauuccaCUGAAGUGUUUGGGGGAACUCcgga
(((.((((((((((((((((((((.(((((..((((((..((....)).))))))....))))).)))))))))))))))))))).)))

Structure

   a                    U     --au      uu  u 
ucu gaGUUCUCCCGAACACUUCA UGgaa    auguua  cu a
||| |||||||||||||||||||| |||||    ||||||  ||  
agg CUCAAGGGGGUUUGUGAAGU accuu    uacaau  ga u
   c                    C     aauu      -c  u 

Annotation confidence Not enough data

Genome context

chr16: 16722048-16722136 [-]

Mature cas-miR395d-5p

• Accession: MIMAT0045344
• Description: Camelina sativa cas-miR395d-5p mature miRNA
• Sequence: 7 - GUUCUCCCGAACACUUCAUUG - 27
• Evidence: experimental ; Illumina [1]

Mature cas-miR395d-3p

• Accession: MIMAT0045345
• Description: Camelina sativa cas-miR395d-3p mature miRNA
• Sequence: 65 - CUGAAGUGUUUGGGGGAACUC - 85
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542