Stem-loop tca-mir-3851m-1

Accession

MI0037345

Description

Tribolium castaneum tca-mir-3851m-1 precursor miRNA

Sequence

2286 reads, 244.0 reads per million, 29 experiments

uuuuuugaguaaauuuaguacugGGUUGGCACAGAGUAGUACUAUguaaaauucuauucuaUAGUACGACCCAUGUCGGCCCAguaagagauuucaauucaccagc
.....(((((((((((..(((((((((((((..(.((.((((((((.............)))))))).)))..)))))))))))))..))))))..))))).....

Structure

uuuuu     --      ag             CA A  A        uaaaa 
     ugagu  aaauuu  uacugGGUUGGCA  G GU GUACUAUg     u
     |||||  ||||||  |||||||||||||  | || ||||||||     u
     acuua  uuuaga  augACCCGGCUGU  C CA CAUGAUau     c
cgacc     ac      ga             AC -  G        cuuau 

Annotation confidence High

Genome context

ref|NC_007425.3|: 6419516-6419621 [+]

Mature tca-miR-3851m-5p

• Accession: MIMAT0045466
• Description: Tribolium castaneum tca-miR-3851m-5p mature miRNA
• Sequence: 24 - GGUUGGCACAGAGUAGUACUAU - 45
• Evidence: experimental ; Illumina [1]

Mature tca-miR-3851m-3p

• Accession: MIMAT0045467
• Description: Tribolium castaneum tca-miR-3851m-3p mature miRNA
• Sequence: 62 - UAGUACGACCCAUGUCGGCCCA - 83
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26518483
   MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "Genome Res (2016) 26:85-96