Stem-loop tca-mir-11614

Accession

MI0037346

Description

Tribolium castaneum tca-mir-11614 precursor miRNA

Sequence

617 reads, 9.0 reads per million, 32 experiments

caguaggugauacaagccacugucugaacguuuagcguugacUGUGUGGAUGAUCGUGUGGUAGccgauggaaguaacgGUAGUGCGAUCAUCCGCUGUCaaagcuuuacuaccaacaguccaaguggcuucgggacaugguucaccaauaa
.....(((((..(((((((((..(((...((..(((.(((((...(((((((((((((.....((((.((....)).))))..))))))))))))).))))).)))..))......)))....)))))))........))..))))).....

Structure

cagua     ua  --------       --gu   ---aac  uu   g     UGU             UGGUA    a  g 
     gguga  ca        agccacu    cug      gu  agc uugac   GUGGAUGAUCGUG     Gccg ug a
     |||||  ||        |||||||    |||      ||  ||| |||||   |||||||||||||     |||| ||  
     ccacu  gu        ucgguga    gac      ca  ucg aaCUG   CGCCUACUAGCGU     UGgc au a
aauaa     ug  acagggcu       accu   aaccau  uu   a     --U             ---GA    a  g 

Annotation confidence High

Genome context

ref|NC_007416.3|: 4434353-4434504 [+]

Mature tca-miR-11614-5p

• Accession: MIMAT0045468
• Description: Tribolium castaneum tca-miR-11614-5p mature miRNA
• Sequence: 43 - UGUGUGGAUGAUCGUGUGGUAG - 64
• Evidence: experimental ; Illumina [1]

Mature tca-miR-11614-3p

• Accession: MIMAT0045469
• Description: Tribolium castaneum tca-miR-11614-3p mature miRNA
• Sequence: 80 - GUAGUGCGAUCAUCCGCUGUC - 100
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26518483
   MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "Genome Res (2016) 26:85-96