Stem-loop tca-mir-3806b-1

Accession

MI0037348

Description

Tribolium castaneum tca-mir-3806b-1 precursor miRNA

Sequence

2774 reads, 54.0 reads per million, 32 experiments

cucaguaaauuuuccuguUUCUACGUACGGAUUCGUAcauauuuuuugaacaaucaaaaUAUGUGUAUUCGUGCGUAGCAAUagggggguuuggugca
..((.((((((((((((((.((((((((((....((((((((.((((((....)))))).)))))))))))))))))).)))))))))))))).))..

Structure

cu  g              U          AUUC        u      a 
  ca uaaauuuuccuguU CUACGUACGG    GUAcauau uuuuga c
  || |||||||||||||| ||||||||||    |||||||| ||||||  
  gu guuuggggggaUAA GAUGCGUGCU    UAUGUGUA aaaacu a
ac  g              C          ----        U      a 

Annotation confidence High

Genome context

ref|NC_007416.3|: 6596552-6596649 [+]

Clustered miRNAs

33 other miRNAs are < 10 kb from tca-mir-3806b-1

Mature tca-miR-3806b-5p

• Accession: MIMAT0045472
• Description: Tribolium castaneum tca-miR-3806b-5p mature miRNA
• Sequence: 19 - UUCUACGUACGGAUUCGUA - 37
• Evidence: experimental ; Illumina [1]

Mature tca-miR-3806b-3p

• Accession: MIMAT0045473
• Description: Tribolium castaneum tca-miR-3806b-3p mature miRNA
• Sequence: 60 - UAUGUGUAUUCGUGCGUAGCAAU - 82
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26518483
   MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "Genome Res (2016) 26:85-96