Stem-loop tca-mir-3806b-2

Accession

MI0037349

Description

Tribolium castaneum tca-mir-3806b-2 precursor miRNA

Sequence

2775 reads, 55.0 reads per million, 31 experiments

cagucaauuuuccuguUUCUACGUACGGAUUCGUAcauauuuuuugaauaaucaaaaUAUGUGUAUUCGUGCGUAGCAAUagggggguuuggug
((.(.((((((((((((.((((((((((....((((((((.((((((....)))))).)))))))))))))))))).)))))))))))).).))

Structure

  g c            U          AUUC        u      a 
ca u aauuuuccuguU CUACGUACGG    GUAcauau uuuuga u
|| | |||||||||||| ||||||||||    |||||||| ||||||  
gu g uuggggggaUAA GAUGCGUGCU    UAUGUGUA aaaacu a
  g u            C          ----        U      a 

Annotation confidence High

Genome context

ref|NC_007416.3|: 6596877-6596970 [+]

Clustered miRNAs

31 other miRNAs are < 10 kb from tca-mir-3806b-2

Mature tca-miR-3806b-5p

• Accession: MIMAT0045472
• Description: Tribolium castaneum tca-miR-3806b-5p mature miRNA
• Sequence: 17 - UUCUACGUACGGAUUCGUA - 35
• Evidence: experimental ; Illumina [1]

Mature tca-miR-3806b-3p

• Accession: MIMAT0045473
• Description: Tribolium castaneum tca-miR-3806b-3p mature miRNA
• Sequence: 58 - UAUGUGUAUUCGUGCGUAGCAAU - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26518483
   MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "Genome Res (2016) 26:85-96