miRBase entry: tca-mir-3806b-3

Stem-loop tca-mir-3806b-3

Accession

MI0037350

Description

Tribolium castaneum tca-mir-3806b-3 precursor miRNA

Sequence

uuggucagucaacagcuuugcuguguagguugaggagcaucucagucaauuuuccuguuUCUACGUACGGAUUCGUAcauauuuuuugaacaauuaaaaUAUGUGUAUUCGUGCGUAGCAAuagggggguuuggugcaaucaacggcaucguauauuuuauguugguuguaauc
.....(((((((((....(((.((((..(((((...(((((......((((((((((((.((((((((((((...((((((((((..........)))))))))).)))))))))))).)))))))))))).)))))..))))).)))).))).......))))))))).....

Structure

uuggu         ---gcuu   u    ag     gga     ucaguc            U            UCG          uuga 
     cagucaaca       ugc gugu  guuga   gcauc      aauuuuccuguu CUACGUACGGAU   UAcauauuuu    a
     |||||||||       ||| ||||  |||||   |||||      |||||||||||| ||||||||||||   ||||||||||     
     guugguugu       aug uacg  caacu   cgugg      uuggggggauAA GAUGCGUGCUUA   GUGUAUaaaa    c
cuaau         auuuuau   c    -g     -aa     -----u            C            --U          uuaa

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

ChLGX: 5784819-5784992 [-]

Clustered miRNAs

31 other miRNAs are < 10 kb from tca-mir-3806b-3

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tca-miR-3806b-5p

Accession	MIMAT0045472
Description	Tribolium castaneum tca-miR-3806b-5p mature miRNA
Sequence	60 - UCUACGUACGGAUUCGUA - 77
Evidence	experimental Illumina [1]

Mature tca-miR-3806b-3p

Accession	MIMAT0045473
Description	Tribolium castaneum tca-miR-3806b-3p mature miRNA
Sequence	100 - UAUGUGUAUUCGUGCGUAGCAA - 121
Evidence	experimental Illumina [1]

References

PubMed ID: 26518483
MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"Genome Res (2016) 26:85-96