Stem-loop tca-mir-3806b-3

Accession

MI0037350

Description

Tribolium castaneum tca-mir-3806b-3 precursor miRNA

Sequence

2776 reads, 54.0 reads per million, 32 experiments

uuggucagucaacagcuuugcuguguagguugaggagcaucucagucaauuuuccuguUUCUACGUACGGAUUCGUAcauauuuuuugaacaauuaaaaUAUGUGUAUUCGUGCGUAGCAAUagggggguuuggugcaaucaacggcaucguauauuuuauguugguuguaauc
.....(((((((((....(((.((((..(((((...(((((......((((((((((((.((((((((((((...((((((((((..........)))))))))).)))))))))))).)))))))))))).)))))..))))).)))).))).......))))))))).....

Structure

uuggu         ---gcuu   u    ag     gga     ucaguc            U            UCG          uuga 
     cagucaaca       ugc gugu  guuga   gcauc      aauuuuccuguU CUACGUACGGAU   UAcauauuuu    a
     |||||||||       ||| ||||  |||||   |||||      |||||||||||| ||||||||||||   ||||||||||     
     guugguugu       aug uacg  caacu   cgugg      uuggggggaUAA GAUGCGUGCUUA   GUGUAUaaaa    c
cuaau         auuuuau   c    -g     -aa     -----u            C            --U          uuaa 

Annotation confidence High

Genome context

ref|NC_007416.3|: 6597168-6597341 [+]

Clustered miRNAs

31 other miRNAs are < 10 kb from tca-mir-3806b-3

Mature tca-miR-3806b-5p

• Accession: MIMAT0045472
• Description: Tribolium castaneum tca-miR-3806b-5p mature miRNA
• Sequence: 59 - UUCUACGUACGGAUUCGUA - 77
• Evidence: experimental ; Illumina [1]

Mature tca-miR-3806b-3p

• Accession: MIMAT0045473
• Description: Tribolium castaneum tca-miR-3806b-3p mature miRNA
• Sequence: 100 - UAUGUGUAUUCGUGCGUAGCAAU - 122
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26518483
   MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "Genome Res (2016) 26:85-96