Stem-loop tca-mir-3806b-4

Accession

MI0037351

Description

Tribolium castaneum tca-mir-3806b-4 precursor miRNA

Sequence

2769 reads, 55.0 reads per million, 31 experiments

uguagguugaggagcaucucagucaauuuuccuguUUCUACGUACGGAUUCGUAcauauuuuuuaaacaaucagaaUAUGUGUAUUCGUGCGUAGCAAUagggggauuuggugcaaucaacggcgu
.((..(((((...(((((..((((....((((((((.((((((((((((...((((((((((..........)))))))))).)))))))))))).)))))))))))).)))))..))))).))..

Structure

-u  ag     gga     uc    aauu        U            UCG          uuaa 
  gu  guuga   gcauc  aguc    uuccuguU CUACGUACGGAU   UAcauauuuu    a
  ||  |||||   |||||  ||||    |||||||| ||||||||||||   ||||||||||     
  cg  caacu   cgugg  uuag    ggggaUAA GAUGCGUGCUUA   GUGUAUaaga    c
ug  -g     -aa     -u    ----        C            --U          cuaa 

Annotation confidence High

Genome context

ref|NC_007416.3|: 6597854-6597979 [+]

Clustered miRNAs

29 other miRNAs are < 10 kb from tca-mir-3806b-4

Mature tca-miR-3806b-5p

• Accession: MIMAT0045472
• Description: Tribolium castaneum tca-miR-3806b-5p mature miRNA
• Sequence: 36 - UUCUACGUACGGAUUCGUA - 54
• Evidence: experimental ; Illumina [1]

Mature tca-miR-3806b-3p

• Accession: MIMAT0045473
• Description: Tribolium castaneum tca-miR-3806b-3p mature miRNA
• Sequence: 77 - UAUGUGUAUUCGUGCGUAGCAAU - 99
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26518483
   MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "Genome Res (2016) 26:85-96