miRBase entry: tca-mir-3851l-1

Stem-loop tca-mir-3851l-1

Accession

MI0037353

Description

Tribolium castaneum tca-mir-3851l-1 precursor miRNA

Sequence

gaauaaauuuagugcugGGUUGGCAUAAGGUGGUACCAUGuaacauuuuaacccaUAGUACGACCCAUGCCGACUCAguaauaaauuacaau
.....((((((.((((((((((((((..(((.((((.(((.............))).)))).))).)))))))))))))).)))))).....

Structure

gaaua      g              AA   G    C   uaaca 
     aauuua ugcugGGUUGGCAU  GGU GUAC AUG     u
     |||||| ||||||||||||||  ||| |||| |||     u
     uuaaau augACUCAGCCGUA  CCA CAUG Uac     u
uaaca      a              -C   G    A   ccaau

Annotation confidence Not enough data

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Genome context

ChLG2: 1336237-1336328 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from tca-mir-3851l-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tca-miR-3851l-5p

Accession	MIMAT0045476
Description	Tribolium castaneum tca-miR-3851l-5p mature miRNA
Sequence	18 - GGUUGGCAUAAGGUGGUACCAUG - 40
Evidence	experimental Illumina [1]

Mature tca-miR-3851l-3p

Accession	MIMAT0045477
Description	Tribolium castaneum tca-miR-3851l-3p mature miRNA
Sequence	56 - UAGUACGACCCAUGCCGACUCA - 77
Evidence	experimental Illumina [1]

References

PubMed ID: 26518483
MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"Genome Res (2016) 26:85-96