Stem-loop tca-mir-3851l-1

Accession

MI0037353

Description

Tribolium castaneum tca-mir-3851l-1 precursor miRNA

Sequence

1032 reads, 84.0 reads per million, 32 experiments

gaauaaauuuagugcugGGUUGGCAUAAGGUGGUACCauguaacauuuuaacccaUAGUACGACCCAUGCCGACUCAguaauaaauuacaau
.....((((((.((((((((((((((..(((.((((.(((.............))).)))).))).)))))))))))))).)))))).....

Structure

gaaua      g              AA   G    C   uaaca 
     aauuua ugcugGGUUGGCAU  GGU GUAC aug     u
     |||||| ||||||||||||||  ||| |||| |||     u
     uuaaau augACUCAGCCGUA  CCA CAUG Uac     u
uaaca      a              -C   G    A   ccaau 

Annotation confidence Not enough data

Genome context

ref|NC_007417.3|: 344901-344992 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from tca-mir-3851l-1

Mature tca-miR-3851l-5p

• Accession: MIMAT0045476
• Description: Tribolium castaneum tca-miR-3851l-5p mature miRNA
• Sequence: 18 - GGUUGGCAUAAGGUGGUACC - 37
• Evidence: experimental ; Illumina [1]

Mature tca-miR-3851l-3p

• Accession: MIMAT0045477
• Description: Tribolium castaneum tca-miR-3851l-3p mature miRNA
• Sequence: 56 - UAGUACGACCCAUGCCGACUCA - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26518483
   MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "Genome Res (2016) 26:85-96