miRBase entry: tca-mir-3836c-1

Stem-loop tca-mir-3836c-1

Accession

MI0037355

Description

Tribolium castaneum tca-mir-3836c-1 precursor miRNA

Sequence

uuuccgaaauugcugccAGGUCCACCUUUUGCUUUUGUUGAUauuuauuuaacuauCACUGGGCAAGGUAGACCUUGGaguuguuucuuaaa
.....(((((.(((.(((((((.((((..(((((..((.((((..........)))))).))))))))).)))).)))))).))))).....

Structure

uuucc     u   g   -    C    UU     UU  U    uuua 
     gaaau gcu ccA GGUC ACCU  UGCUU  GU GAUa    u
     ||||| ||| ||| |||| ||||  |||||  || ||||     
     cuuug uga GGU CCAG UGGA  ACGGG  CA Cuau    u
aaauu     u   -   U    A    --     -U  -    caau

Annotation confidence Not enough data

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Genome context

ChLG2: 1355772-1355863 [-]

Clustered miRNAs

11 other miRNAs are < 10 kb from tca-mir-3836c-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tca-miR-3836c-5p

Accession	MIMAT0045480
Description	Tribolium castaneum tca-miR-3836c-5p mature miRNA
Sequence	18 - AGGUCCACCUUUUGCUUUUGUUGAU - 42
Evidence	experimental Illumina [1]

Mature tca-miR-3836c-1-3p

Accession	MIMAT0045481
Description	Tribolium castaneum tca-miR-3836c-1-3p mature miRNA
Sequence	57 - CACUGGGCAAGGUAGACCUUGG - 78
Evidence	experimental Illumina [1]

References

PubMed ID: 26518483
MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"Genome Res (2016) 26:85-96