Stem-loop tca-mir-3851n-1

Accession

MI0037356

Description

Tribolium castaneum tca-mir-3851n-1 precursor miRNA

Sequence

2350 reads, 152.0 reads per million, 34 experiments

auuuuugaguaaauuuaguacugGGUUGGCACAGAGUAGUACUguguaaaauucuauuucaUAGUACGACCCAUGCCGGCcuaguaagaaauuucaauucaccagc
.....(((((((((((..(((((((((((((..(.((.((((((((.(((......))))))))))).)))..)))))))))))))..))))))..))))).....

Structure

auuuu     --      ag             CA A  A        u   au 
     ugagu  aaauuu  uacugGGUUGGCA  G GU GUACUgug aaa  u
     |||||  ||||||  |||||||||||||  | || |||||||| |||   
     acuua  uuuaaa  augaucCGGCCGU  C CA CAUGAUac uuu  c
cgacc     ac      ga             AC -  G        -   au 

Annotation confidence Medium

Genome context

ref|NC_007417.3|: 369992-370097 [-]

Clustered miRNAs

10 other miRNAs are < 10 kb from tca-mir-3851n-1

Mature tca-miR-3851n-5p

• Accession: MIMAT0045482
• Description: Tribolium castaneum tca-miR-3851n-5p mature miRNA
• Sequence: 24 - GGUUGGCACAGAGUAGUACU - 43
• Evidence: experimental ; Illumina [1]

Mature tca-miR-3851n-3p

• Accession: MIMAT0045483
• Description: Tribolium castaneum tca-miR-3851n-3p mature miRNA
• Sequence: 62 - UAGUACGACCCAUGCCGGC - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26518483
   MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "Genome Res (2016) 26:85-96