miRBase entry: tca-mir-11617a-1

Stem-loop tca-mir-11617a-1

Accession

MI0037357

Description

Tribolium castaneum tca-mir-11617a-1 precursor miRNA

Sequence

uuuuggaauucaccauUGAGUUGGCAUAGGGUAGUACUgcagaccaauguaauugUAGUACUUCCUAGGGCAGCUUAuuaaggaauucaaauu
.....((((((.....(((((((.(.(((((.((((((((((((....))..))))))))))))))).).))))))).....)))))).....

Structure

uuuug      accau       G A     U          --  c 
     gaauuc     UGAGUUG C UAGGG AGUACUgcag  ac a
     ||||||     ||||||| | ||||| ||||||||||  ||  
     cuuaag     AUUCGAC G AUCCU UCAUGAUguu  ug a
uuaaa      gaauu       G G     -          aa  u

Annotation confidence Not enough data

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Genome context

ChLG2: 2692443-2692535 [+]

Clustered miRNAs

19 other miRNAs are < 10 kb from tca-mir-11617a-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tca-miR-11617a-5p

Accession	MIMAT0045484
Description	Tribolium castaneum tca-miR-11617a-5p mature miRNA
Sequence	17 - UGAGUUGGCAUAGGGUAGUACU - 38
Evidence	experimental Illumina [1]

Mature tca-miR-11617a-3p

Accession	MIMAT0045485
Description	Tribolium castaneum tca-miR-11617a-3p mature miRNA
Sequence	56 - UAGUACUUCCUAGGGCAGCUUA - 77
Evidence	experimental Illumina [1]

References

PubMed ID: 26518483
MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"Genome Res (2016) 26:85-96