Stem-loop tca-mir-11617a-1

Accession

MI0037357

Description

Tribolium castaneum tca-mir-11617a-1 precursor miRNA

Sequence

2459 reads, 160.0 reads per million, 33 experiments

uuuuggaauucaccauUGAGUUGGCAUAGGGUAGUACUgcagaccaauguaauugUAGUACUUCCUAGGGCAGCUUAUuaaggaauucaaauu
.....((((((.....(((((((.(.(((((.((((((((((((....))..))))))))))))))).).))))))).....)))))).....

Structure

uuuug      accau       G A     U          --  c 
     gaauuc     UGAGUUG C UAGGG AGUACUgcag  ac a
     ||||||     ||||||| | ||||| ||||||||||  ||  
     cuuaag     AUUCGAC G AUCCU UCAUGAUguu  ug a
uuaaa      gaauU       G G     -          aa  u 

Annotation confidence High

Genome context

ref|NC_007417.3|: 1150624-1150716 [+]

Clustered miRNAs

21 other miRNAs are < 10 kb from tca-mir-11617a-1

Mature tca-miR-11617a-5p

• Accession: MIMAT0045484
• Description: Tribolium castaneum tca-miR-11617a-5p mature miRNA
• Sequence: 17 - UGAGUUGGCAUAGGGUAGUACU - 38
• Evidence: experimental ; Illumina [1]

Mature tca-miR-11617a-3p

• Accession: MIMAT0045485
• Description: Tribolium castaneum tca-miR-11617a-3p mature miRNA
• Sequence: 56 - UAGUACUUCCUAGGGCAGCUUAU - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26518483
   MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "Genome Res (2016) 26:85-96