miRBase entry: tca-mir-3836d

Stem-loop tca-mir-3836d

Accession

MI0037358

Description

Tribolium castaneum tca-mir-3836d precursor miRNA

Sequence

uuuucguaauuucugcucGGUCUAUCCCUGCUUUGGUUGAUAUUUauuuaauuaUCACUGGGCAAAGUAGGCCCUGcaguaguuucuucaa
.....(.((((.((((..(((((((...(((((.(((.((((..........))))))))))))..)))))))..)))).)))).).....

Structure

uuuuc u    u    uc       CCC     U   U    UUUa 
     g aauu cugc  GGUCUAU   UGCUU GGU GAUA    u
     | |||| ||||  |||||||   ||||| ||| ||||     
     c uuga gacG  CCGGAUG   ACGGG UCA CUau    u
aacuu u    u    UC       -AA     -   -    uaau

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

ChLG2: 2691160-2691250 [+]

Clustered miRNAs

21 other miRNAs are < 10 kb from tca-mir-3836d

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tca-miR-3836d-5p

Accession	MIMAT0045486
Description	Tribolium castaneum tca-miR-3836d-5p mature miRNA
Sequence	19 - GGUCUAUCCCUGCUUUGGUUGAUAUUU - 45
Evidence	experimental Illumina [1]

Mature tca-miR-3836d-3p

Accession	MIMAT0045487
Description	Tribolium castaneum tca-miR-3836d-3p mature miRNA
Sequence	55 - UCACUGGGCAAAGUAGGCCCUG - 76
Evidence	experimental Illumina [1]

References

PubMed ID: 26518483
MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"Genome Res (2016) 26:85-96