miRBase entry: tca-mir-3851o-2

Stem-loop tca-mir-3851o-2

Accession

MI0037361

Description

Tribolium castaneum tca-mir-3851o-2 precursor miRNA

Sequence

uauuaaauuuagugcuuGGUUGGCGUGGAGUGGUACCAUGuaaaauuuuaauccaUAGUACGACCCAUUCCGGCCCAguaauaaauuaaaau
.....((((((.((((.((((((.((((.((.((((.(((.............))).)))).)))))).)))))).)))).)))))).....

Structure

uauua      g    u      C    A  G    C   uaaaa 
     aauuua ugcu GGUUGG GUGG GU GUAC AUG     u
     |||||| |||| |||||| |||| || |||| |||     u
     uuaaau augA CCGGCC UACC CA CAUG Uac     u
uaaaa      a    C      U    -  G    A   cuaau

Annotation confidence Not enough data

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Genome context

ChLG2: 2688436-2688527 [+]

Clustered miRNAs

21 other miRNAs are < 10 kb from tca-mir-3851o-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tca-miR-3851o-2-5p

Accession	MIMAT0045491
Description	Tribolium castaneum tca-miR-3851o-2-5p mature miRNA
Sequence	18 - GGUUGGCGUGGAGUGGUACCAUG - 40
Evidence	experimental Illumina [1]

Mature tca-miR-3851o-3p

Accession	MIMAT0045492
Description	Tribolium castaneum tca-miR-3851o-3p mature miRNA
Sequence	56 - UAGUACGACCCAUUCCGGCCCA - 77
Evidence	experimental Illumina [1]

References

PubMed ID: 26518483
MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"Genome Res (2016) 26:85-96