miRBase entry: tca-mir-3836e

Stem-loop tca-mir-3836e

Accession

MI0037364

Description

Tribolium castaneum tca-mir-3836e precursor miRNA

Sequence

auuuucugcUUGGUCUAUCCUUGCUUUGGUUGAUauuuauuuaauuaUCACUGGGCAAAGUAGACCUUGcaguaguu
.....((((..(((((((..((((((.(((.((((..........))))))))))))).)))))))..)))).....

Structure

auuuu    UU       CC      U   U    uuua 
     cugc  GGUCUAU  UUGCUU GGU GAUa    u
     ||||  |||||||  |||||| ||| ||||     
     gacG  CCAGAUG  AACGGG UCA CUau    u
uugau    UU       -A      -   -    uaau

Annotation confidence Not enough data

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Genome context

ChLG2: 2686164-2686240 [+]

Clustered miRNAs

21 other miRNAs are < 10 kb from tca-mir-3836e

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tca-miR-3836e-5p

Accession	MIMAT0045497
Description	Tribolium castaneum tca-miR-3836e-5p mature miRNA
Sequence	10 - UUGGUCUAUCCUUGCUUUGGUUGAU - 34
Evidence	experimental Illumina [1]

Mature tca-miR-3836e-3p

Accession	MIMAT0045498
Description	Tribolium castaneum tca-miR-3836e-3p mature miRNA
Sequence	48 - UCACUGGGCAAAGUAGACCUUG - 69
Evidence	experimental Illumina [1]

References

PubMed ID: 26518483
MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"Genome Res (2016) 26:85-96