Stem-loop tca-mir-11619e

Accession

MI0037365

Description

Tribolium castaneum tca-mir-11619e precursor miRNA

Sequence

1449 reads, 152.0 reads per million, 29 experiments

aacaaaacuaucggaugagagaUGAGAGUUUGCGAUAAUCUUcauuuuagaauuuaacaAAUGAGGAGUCACAGACUUGAUUuuucgcucgauuguucgaca
.....(((.(((((.((((((((..(((((((.(((..(((((((((...........)))))))))))).))))))).)))))))).))))).))).....

Structure

aacaa   u     a        GA       C   AA         uaga 
     aac aucgg ugagagaU  GAGUUUG GAU  UCUUcauuu    a
     ||| ||||| ||||||||  ||||||| |||  |||||||||    u
     uug uagcu gcuuuUUA  UUCAGAC CUG  AGGAGUAAa    u
acagc   u     c        -G       A   --         caau 

Annotation confidence Not enough data

Genome context

ref|NC_007417.3|: 1144029-1144130 [+]

Clustered miRNAs

23 other miRNAs are < 10 kb from tca-mir-11619e

Mature tca-miR-11619e-5p

• Accession: MIMAT0045499
• Description: Tribolium castaneum tca-miR-11619e-5p mature miRNA
• Sequence: 23 - UGAGAGUUUGCGAUAAUCUU - 42
• Evidence: experimental ; Illumina [1]

Mature tca-miR-11619e-3p

• Accession: MIMAT0045500
• Description: Tribolium castaneum tca-miR-11619e-3p mature miRNA
• Sequence: 60 - AAUGAGGAGUCACAGACUUGAUU - 82
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26518483
   MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "Genome Res (2016) 26:85-96