miRBase entry: tca-mir-3836c-3

Stem-loop tca-mir-3836c-3

Accession

MI0037366

Description

Tribolium castaneum tca-mir-3836c-3 precursor miRNA

Sequence

uuuucgaaauuucugccAGGUCCACCUUUUGCUUUCGUUGAUAauuauuuaacuaUCACUGGGCAAGGUAGACCCUGgagugguuucuuaaa
.....((((((.((.(((((((.((((..(((((..((.((((..........)))))).))))))))).)).))))))).)))))).....

Structure

uuuuc      u  g     -  C    UU     UC  U    auua 
     gaaauu cu ccAGG UC ACCU  UGCUU  GU GAUA    u
     |||||| || ||||| || ||||  |||||  || ||||     
     cuuugg ga gGUCC AG UGGA  ACGGG  CA CUau    u
aaauu      u  -     C  A    --     -U  -    caau

Annotation confidence Not enough data

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Genome context

ChLG2: 2685740-2685831 [+]

Clustered miRNAs

21 other miRNAs are < 10 kb from tca-mir-3836c-3

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tca-miR-3836c-3-5p

Accession	MIMAT0045501
Description	Tribolium castaneum tca-miR-3836c-3-5p mature miRNA
Sequence	18 - AGGUCCACCUUUUGCUUUCGUUGAUA - 43
Evidence	experimental Illumina [1]

Mature tca-miR-3836c-3p

Accession	MIMAT0045502
Description	Tribolium castaneum tca-miR-3836c-3p mature miRNA
Sequence	56 - UCACUGGGCAAGGUAGACCCUG - 77
Evidence	experimental Illumina [1]

References

PubMed ID: 26518483
MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"Genome Res (2016) 26:85-96