miRBase entry: tca-mir-3836f

Stem-loop tca-mir-3836f

Accession

MI0037371

Description

Tribolium castaneum tca-mir-3836f precursor miRNA

Sequence

auuuucugcuCGGUCUAUCCUUGCUUCGGUUGAUAuuuauuuaauuaUCACUGGGGAAAGUAGACCUUGcaguaguu
.....((((..((((((..(((.(((((((.((((..........))))))))))).)))))))))..)))).....

Structure

auuuu    uC      UC   G       U    uuua 
     cugc  GGUCUA  CUU CUUCGGU GAUA    u
     ||||  ||||||  ||| ||||||| ||||     
     gacG  CCAGAU  GAA GGGGUCA CUau    u
uugau    UU      --   A       -    uaau

Annotation confidence Not enough data

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Genome context

ChLG2: 2682284-2682360 [+]

Clustered miRNAs

20 other miRNAs are < 10 kb from tca-mir-3836f

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tca-miR-3836f-5p

Accession	MIMAT0045506
Description	Tribolium castaneum tca-miR-3836f-5p mature miRNA
Sequence	11 - CGGUCUAUCCUUGCUUCGGUUGAUA - 35
Evidence	experimental Illumina [1]

Mature tca-miR-3836f-3p

Accession	MIMAT0045507
Description	Tribolium castaneum tca-miR-3836f-3p mature miRNA
Sequence	48 - UCACUGGGGAAAGUAGACCUUG - 69
Evidence	experimental Illumina [1]

References

PubMed ID: 26518483
MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"Genome Res (2016) 26:85-96