Stem-loop tca-mir-11619f

Accession

MI0037372

Description

Tribolium castaneum tca-mir-11619f precursor miRNA

Sequence

1116 reads, 88.0 reads per million, 29 experiments

aaauuaucgaaugagagaUGAGAGUUUGUGAUAAUCUUCAUUUuagaauuuaacaaAUGAGGAGUCACAGACUUGAUcuuucgcucgauugcuc
.....(((((.((((((((..(((((((((((..(((((((((...........)))))))))))))))))))).)))))))).))))).....

Structure

aaauu     a        GA           AA         uaga 
     aucga ugagagaU  GAGUUUGUGAU  UCUUCAUUU    a
     ||||| ||||||||  |||||||||||  |||||||||    u
     uagcu gcuuucUA  UUCAGACACUG  AGGAGUAaa    u
cucgu     c        -G           --         caau 

Annotation confidence Medium

Genome context

ref|NC_007417.3|: 1139919-1140012 [+]

Clustered miRNAs

21 other miRNAs are < 10 kb from tca-mir-11619f

Mature tca-miR-11619f-5p

• Accession: MIMAT0045508
• Description: Tribolium castaneum tca-miR-11619f-5p mature miRNA
• Sequence: 19 - UGAGAGUUUGUGAUAAUCUUCAUUU - 43
• Evidence: experimental ; Illumina [1]

Mature tca-miR-11619f-3p

• Accession: MIMAT0045509
• Description: Tribolium castaneum tca-miR-11619f-3p mature miRNA
• Sequence: 57 - AUGAGGAGUCACAGACUUGAU - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26518483
   MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "Genome Res (2016) 26:85-96