miRBase entry: tca-mir-11619b

Stem-loop tca-mir-11619b

Accession

MI0037375

Description

Tribolium castaneum tca-mir-11619b precursor miRNA

Sequence

uugucgggugugacacaaagucuaugauauucuucauucuauaauucaccaaaUGAAGGGUCACAGACUUUGUCUucgaccacacuucauug
..((..(((..((.(((((((((.((((..((((((((.............)))))))))))).))))))))).))..)))..)).......

Structure

-----uu  cg   gu  c         a    au        cuaua 
       gu  ggu  ga acaaagucu ugau  ucuucauu     a
       ||  |||  || ||||||||| ||||  ||||||||     u
       ca  cca  uU UGUUUCAGA ACUG  GGAAGUaa     u
guuacuu  ca   gc  C         C    --        accac

Annotation confidence Not enough data

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Genome context

ChLG2: 1363053-1363144 [+]

Clustered miRNAs

10 other miRNAs are < 10 kb from tca-mir-11619b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tca-miR-11619b-3p

Accession	MIMAT0045512
Description	Tribolium castaneum tca-miR-11619b-3p mature miRNA
Sequence	54 - UGAAGGGUCACAGACUUUGUCU - 75
Evidence	experimental Illumina [1]

References

PubMed ID: 26518483
MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"Genome Res (2016) 26:85-96