miRBase entry: tca-mir-3851g-1

Stem-loop tca-mir-3851g-1

Accession

MI0037381

Description

Tribolium castaneum tca-mir-3851g-1 precursor miRNA

Sequence

aauuaaauuuaauacugAGUGGACAUGGGGUGAUACUGUGuaauuuuugacucaUAGUACGACCCAUGUUGGCUCAguaauaaauuacauu
.....((((((.((((((((.((((((((..(.(((((((............))))))))..)))))))).)))))))).)))))).....

Structure

aauua      a        G        GU A       uaauu 
     aauuua uacugAGU GACAUGGG  G UACUGUG     u
     |||||| |||||||| ||||||||  | |||||||      
     uuaaau augACUCG UUGUACCC  C AUGAUac     u
uuaca      a        G        AG -       ucagu

Annotation confidence Not enough data

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Genome context

ChLG5: 208780-208870 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from tca-mir-3851g-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tca-miR-3851g-5p

Accession	MIMAT0045521
Description	Tribolium castaneum tca-miR-3851g-5p mature miRNA
Sequence	18 - AGUGGACAUGGGGUGAUACUGUG - 40
Evidence	experimental Illumina [1]

Mature tca-miR-3851g-3p

Accession	MIMAT0045522
Description	Tribolium castaneum tca-miR-3851g-3p mature miRNA
Sequence	55 - UAGUACGACCCAUGUUGGCUCA - 76
Evidence	experimental Illumina [1]

References

PubMed ID: 26518483
MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"Genome Res (2016) 26:85-96