Stem-loop tca-mir-11624a-3

Accession

MI0037384

Description

Tribolium castaneum tca-mir-11624a-3 precursor miRNA

Sequence

986 reads, 76.0 reads per million, 26 experiments

auaauagauugauguaaaAUUGAGACUUUAACAUUUUCAUGcaauuuauaucaacaUGAUAUGCUAGAGUGUCGGUUuuacaacuaucacaaaucaaucuucgaa
.....((((((((((((((((((.((((((.(((..(((((.............))))).))).)))))).)))))))))))...........))))))).....

Structure

auaau       -----------           G      A   UU     caauu 
     agauuga           uguaaaAUUGA ACUUUA CAU  UCAUG     u
     |||||||           ||||||||||| |||||| |||  |||||     a
     ucuaacu           acauuUUGGCU UGAGAU GUA  AGUac     u
aagcu       aaacacuauca           G      C   -U     aacua 

Annotation confidence High

Genome context

ref|NC_007420.3|: 505236-505340 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from tca-mir-11624a-3

Mature tca-miR-11624a-5p

• Accession: MIMAT0045523
• Description: Tribolium castaneum tca-miR-11624a-5p mature miRNA
• Sequence: 19 - AUUGAGACUUUAACAUUUUCAUG - 41
• Evidence: experimental ; Illumina [1]

Mature tca-miR-11624a-3-3p

• Accession: MIMAT0045525
• Description: Tribolium castaneum tca-miR-11624a-3-3p mature miRNA
• Sequence: 57 - UGAUAUGCUAGAGUGUCGGUU - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26518483
   MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "Genome Res (2016) 26:85-96