Stem-loop tca-mir-309c

Accession

MI0037385

Description

Tribolium castaneum tca-mir-309c precursor miRNA

Literature search

2 open access papers mention tca-mir-309c
(14 sentences)

Sequence

83153 reads, 3987.0 reads per million, 33 experiments

auuccgguaccacuuuuGGAUAAACCAUACUCAGUUGAUGUauuauaaagcaUCACUGGGUAGAGUUUGUCCAAUaguuuuaccaccaa
.....((((..(((.((((((((((..((((((((.(((((........)))))))))))))..)))))))))).)))..)))).....

Structure

auucc    cc   u          CA        U     auu 
     ggua  acu uuGGAUAAAC  UACUCAGU GAUGU   a
     ||||  ||| ||||||||||  |||||||| |||||    
     ccau  uga AACCUGUUUG  AUGGGUCA CUacg   u
aacca    uu   U          AG        -     aaa 

Annotation confidence High

Genome context

ref|NC_007420.3|: 7457318-7457406 [+]

Clustered miRNAs

6 other miRNAs are < 10 kb from tca-mir-309c

Mature tca-miR-309c-5p

• Accession: MIMAT0045526
• Description: Tribolium castaneum tca-miR-309c-5p mature miRNA
• Sequence: 18 - GGAUAAACCAUACUCAGUUGAUGU - 41
• Evidence: experimental ; Illumina [1]

Mature tca-miR-309c-3p

• Accession: MIMAT0045527
• Description: Tribolium castaneum tca-miR-309c-3p mature miRNA
• Sequence: 53 - UCACUGGGUAGAGUUUGUCCAAU - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26518483
   MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "Genome Res (2016) 26:85-96