Stem-loop tca-mir-3851j

Accession

MI0037390

Description

Tribolium castaneum tca-mir-3851j precursor miRNA

Sequence

2971 reads, 188.0 reads per million, 32 experiments

aauaauaaauauggugaugAGUUGAUUUGGGGUGGUACUAUGUuugaagauacgcaUAGUACGUUCCGAAUCAACUuguuaacaaauuuaaauuc
.....(((((.((..(((((((((((((((((..(((((((((..........))))))))).)))))))))))))))))..)).))))).....

Structure

aauaa     a  gu                 UG         uuga 
     uaaau ug  gaugAGUUGAUUUGGGG  GUACUAUGU    a
     ||||| ||  |||||||||||||||||  |||||||||     
     auuua ac  uuguUCAACUAAGCCUU  CAUGAUacg    g
cuuaa     a  aa                 -G         caua 

Annotation confidence High

Genome context

ref|NC_007421.3|: 273008-273102 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from tca-mir-3851j

Mature tca-miR-3851j-5p

• Accession: MIMAT0045536
• Description: Tribolium castaneum tca-miR-3851j-5p mature miRNA
• Sequence: 20 - AGUUGAUUUGGGGUGGUACUAUGU - 43
• Evidence: experimental ; Illumina [1]

Mature tca-miR-3851j-3p

• Accession: MIMAT0045537
• Description: Tribolium castaneum tca-miR-3851j-3p mature miRNA
• Sequence: 57 - UAGUACGUUCCGAAUCAACU - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26518483
   MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "Genome Res (2016) 26:85-96