miRBase entry: tca-mir-11628

Stem-loop tca-mir-11628

Accession

MI0037396

Description

Tribolium castaneum tca-mir-11628 precursor miRNA

Sequence

gcaUCAAAAUAAGGCGUGAAAUUGCAGGAACUCuacuuacguaauguuuaauuuuaucgUGAGUAGAGUUCUUGCAGUCAGUuuuauuuuuuuaa
.....((((((((((.(((..(((((((((((((((((((((((.........))).))))))))))))))))))))))))))))))))).....

Structure

gcaUC          G   AA                    -   ugu 
     AAAAUAAGGC UGA  UUGCAGGAACUCuacuuacg uaa   u
     |||||||||| |||  |||||||||||||||||||| |||   u
     uuuuauuuUG ACU  GACGUUCUUGAGAUGAGUgc auu   a
aauuu          -   --                    u   uua

Annotation confidence Not enough data

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Genome context

ChLG9: 10582062-10582156 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from tca-mir-11628

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tca-miR-11628-5p

Accession	MIMAT0045548
Description	Tribolium castaneum tca-miR-11628-5p mature miRNA
Sequence	4 - UCAAAAUAAGGCGUGAAAUUGCAGGAACUC - 33
Evidence	experimental Illumina [1]

Mature tca-miR-11628-3p

Accession	MIMAT0045549
Description	Tribolium castaneum tca-miR-11628-3p mature miRNA
Sequence	60 - UGAGUAGAGUUCUUGCAGUCAGU - 82
Evidence	experimental Illumina [1]

References

PubMed ID: 26518483
MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"Genome Res (2016) 26:85-96