Stem-loop tca-mir-11628

Accession

MI0037396

Description

Tribolium castaneum tca-mir-11628 precursor miRNA

Sequence

216 reads, 6.0 reads per million, 28 experiments

gcaucaaaauaaggcGUGAAAUUGCAGGAACUCUACUUACguaauguuuaauuuuaucgUGAGUAGAGUUCUUGCAGUCAGUUuuauuuuuuuaa
.....((((((((((.(((..(((((((((((((((((((((((.........))).))))))))))))))))))))))))))))))))).....

Structure

gcauc          G   AA                    -   ugu 
     aaaauaaggc UGA  UUGCAGGAACUCUACUUACg uaa   u
     |||||||||| |||  |||||||||||||||||||| |||   u
     uuuuauuUUG ACU  GACGUUCUUGAGAUGAGUgc auu   a
aauuu          -   --                    u   uua 

Annotation confidence Medium

Genome context

ref|NC_007424.3|: 11124288-11124382 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from tca-mir-11628

Mature tca-miR-11628-5p

• Accession: MIMAT0045548
• Description: Tribolium castaneum tca-miR-11628-5p mature miRNA
• Sequence: 16 - GUGAAAUUGCAGGAACUCUACUUAC - 40
• Evidence: experimental ; Illumina [1]

Mature tca-miR-11628-3p

• Accession: MIMAT0045549
• Description: Tribolium castaneum tca-miR-11628-3p mature miRNA
• Sequence: 60 - UGAGUAGAGUUCUUGCAGUCAGUU - 83
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26518483
   MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "Genome Res (2016) 26:85-96