Stem-loop tca-mir-3851n-2

Accession

MI0037399

Description

Tribolium castaneum tca-mir-3851n-2 precursor miRNA

Sequence

2351 reads, 152.0 reads per million, 34 experiments

auuuuugaguaaauuuaguacugGGUUGGCACAGAGUAGUACUguguaaaauucuauuucaUAGUACGACCCAUGCCGGCcuaguaagagauuucauuucaccagc
.....((((.((((((..(((((((((((((..(.((.((((((((.(((......))))))))))).)))..)))))))))))))..))))))...)))).....

Structure

auuuu    --u      ag             CA A  A        u   au 
     ugag   aaauuu  uacugGGUUGGCA  G GU GUACUgug aaa  u
     ||||   ||||||  |||||||||||||  | || |||||||| |||   
     acuu   uuuaga  augaucCGGCCGU  C CA CAUGAUac uuu  c
cgacc    uac      ga             AC -  G        -   au 

Annotation confidence Medium

Genome context

ref|NW_015450871.1|: 10385-10490 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from tca-mir-3851n-2

Mature tca-miR-3851n-5p

• Accession: MIMAT0045482
• Description: Tribolium castaneum tca-miR-3851n-5p mature miRNA
• Sequence: 24 - GGUUGGCACAGAGUAGUACU - 43
• Evidence: experimental ; Illumina [1]

Mature tca-miR-3851n-3p

• Accession: MIMAT0045483
• Description: Tribolium castaneum tca-miR-3851n-3p mature miRNA
• Sequence: 62 - UAGUACGACCCAUGCCGGC - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26518483
   MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "Genome Res (2016) 26:85-96