Stem-loop tca-mir-11618b-3

Accession

MI0037402

Description

Tribolium castaneum tca-mir-11618b-3 precursor miRNA

Sequence

150 reads, 34.0 reads per million, 20 experiments

caaaauguuuucgauacuuAGUUAGCAUUGGCUGUUUCUAUGcuaauuuauggucaUAGUACAGCCAAUGUUUGCUucaguucggauucaauaac
.....((..(((((.(((.(((.((((((((((((..((((((((.....))).))))).)))))))))))).)))..))))))))..)).....

Structure

caaaa  uu     u   -u   U            UU     -   a 
     ug  uucga acu  AGU AGCAUUGGCUGU  CUAUG cua u
     ||  ||||| |||  ||| ||||||||||||  ||||| ||| u
     ac  aggcu uga  UCG UUGUAACCGACA  GAUac ggu u
caaua  uu     -   cu   U            -U     u   a 

Annotation confidence High

Genome context

ref|NW_015450993.1|: 11468-11562 [-]

Clustered miRNAs

9 other miRNAs are < 10 kb from tca-mir-11618b-3

Mature tca-miR-11618b-5p

• Accession: MIMAT0045495
• Description: Tribolium castaneum tca-miR-11618b-5p mature miRNA
• Sequence: 20 - AGUUAGCAUUGGCUGUUUCUAUG - 42
• Evidence: experimental ; Illumina [1]

Mature tca-miR-11618b-3-3p

• Accession: MIMAT0045555
• Description: Tribolium castaneum tca-miR-11618b-3-3p mature miRNA
• Sequence: 57 - UAGUACAGCCAAUGUUUGCU - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26518483
   MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "Genome Res (2016) 26:85-96