miRBase entry: tca-mir-11618a-3

Stem-loop tca-mir-11618a-3

Accession

MI0037403

Description

Tribolium castaneum tca-mir-11618a-3 precursor miRNA

Sequence

aaaauguuuucgauaaauAGUUAGCAUUGGUCGUUUCUAUGcuucuucguggucaUUGAUCGGCCAAUGUUCGCUUUauuucgaauccucuag
.....(..(((((.....(((.(((((((((((..((.(((((.......)).))).)).))))))))))).))).....)))))..).....

Structure

aaaau uu     uaaau   U           UU  U   -  uc 
     g  uucga     AGU AGCAUUGGUCG  UC AUG cu  u
     |  |||||     ||| |||||||||||  || ||| ||  u
     c  aagcu     UCG UUGUAACCGGC  AG Uac gg  c
gaucu cu     uuaUU   C           -U  U   u  ug

Annotation confidence Not enough data

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Genome context

Unmapped58: 11866-11958 [-]

Clustered miRNAs

7 other miRNAs are < 10 kb from tca-mir-11618a-3

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tca-miR-11618a-5p

Accession	MIMAT0045489
Description	Tribolium castaneum tca-miR-11618a-5p mature miRNA
Sequence	19 - AGUUAGCAUUGGUCGUUUCUAUG - 41
Evidence	experimental Illumina [1]

Mature tca-miR-11618a-3-3p

Accession	MIMAT0045556
Description	Tribolium castaneum tca-miR-11618a-3-3p mature miRNA
Sequence	56 - UUGAUCGGCCAAUGUUCGCUUU - 77
Evidence	experimental Illumina [1]

References

PubMed ID: 26518483
MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"Genome Res (2016) 26:85-96