Stem-loop tca-mir-11619a-1

Accession

MI0037406

Description

Tribolium castaneum tca-mir-11619a-1 precursor miRNA

Sequence

436 reads, 33.0 reads per million, 28 experiments

cuuucgaacggaacaCGAAGUCUGUGAUAUUCUUCAUUUuauaauuuaacaaaUGAAGAGUCAUUGGCUUGGUUUuucguucaacac
.....((((((((.((.(((((.(((((..(((((((((...........)))))))))))))).))))).)).)))))))).....

Structure

cuuuc        c  G     U     AU         uaua 
     gaacggaa aC AAGUC GUGAU  UCUUCAUUU    a
     |||||||| || ||||| |||||  |||||||||    u
     cuugcuuU UG UUCGG UACUG  AGAAGUaaa    u
cacaa        U  G     U     --         caau 

Annotation confidence High

Genome context

ref|NW_015450993.1|: 7927-8013 [-]

Clustered miRNAs

9 other miRNAs are < 10 kb from tca-mir-11619a-1

Mature tca-miR-11619a-5p

• Accession: MIMAT0045515
• Description: Tribolium castaneum tca-miR-11619a-5p mature miRNA
• Sequence: 16 - CGAAGUCUGUGAUAUUCUUCAUUU - 39
• Evidence: experimental ; Illumina [1]

Mature tca-miR-11619a-3p

• Accession: MIMAT0045558
• Description: Tribolium castaneum tca-miR-11619a-3p mature miRNA
• Sequence: 54 - UGAAGAGUCAUUGGCUUGGUUU - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26518483
   MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "Genome Res (2016) 26:85-96