Stem-loop tca-mir-3851m-2

Accession

MI0037407

Description

Tribolium castaneum tca-mir-3851m-2 precursor miRNA

Sequence

2286 reads, 244.0 reads per million, 29 experiments

aaguaaauuuaguacugGGUUGGCACAGAGUAGUACUAUguaaaauucuauuccaUAGUACGACCCAUGUCGGCCCAguaagagauuccaau
.....(((((..(((((((((((((..(.((.((((((((.............)))))))).)))..)))))))))))))..))))).....

Structure

aagua     ag             CA A  A        uaaaa 
     aauuu  uacugGGUUGGCA  G GU GUACUAUg     u
     |||||  |||||||||||||  | || ||||||||     u
     uuaga  augACCCGGCUGU  C CA CAUGAUac     c
uaacc     ga             AC -  G        cuuau 

Annotation confidence High

Genome context

ref|NW_015450993.1|: 24381-24472 [+]

Clustered miRNAs

8 other miRNAs are < 10 kb from tca-mir-3851m-2

Mature tca-miR-3851m-5p

• Accession: MIMAT0045466
• Description: Tribolium castaneum tca-miR-3851m-5p mature miRNA
• Sequence: 18 - GGUUGGCACAGAGUAGUACUAU - 39
• Evidence: experimental ; Illumina [1]

Mature tca-miR-3851m-3p

• Accession: MIMAT0045467
• Description: Tribolium castaneum tca-miR-3851m-3p mature miRNA
• Sequence: 56 - UAGUACGACCCAUGUCGGCCCA - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26518483
   MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "Genome Res (2016) 26:85-96