Stem-loop tca-mir-11617a-4

Accession

MI0037411

Description

Tribolium castaneum tca-mir-11617a-4 precursor miRNA

Sequence

1225 reads, 111.0 reads per million, 29 experiments

uuuuggaauucaccauUGAGUUGGCAUAGGGUAGUACUgcagaccauuguaauugUAGUACUCCCUAGGGCAGCUUAUuaaugaauucaaauu
.....(((((((....(((((((.(.(((((.((((((((((((....))..))))))))))))))).).)))))))....))))))).....

Structure

uuuug       ccau       G A     U          --  c 
     gaauuca    UGAGUUG C UAGGG AGUACUgcag  ac a
     |||||||    ||||||| | ||||| ||||||||||  ||  
     cuuaagu    AUUCGAC G AUCCC UCAUGAUguu  ug u
uuaaa       aauU       G G     -          aa  u 

Annotation confidence High

Genome context

ref|NW_015450993.1|: 29511-29603 [+]

Clustered miRNAs

8 other miRNAs are < 10 kb from tca-mir-11617a-4

Mature tca-miR-11617a-5p

• Accession: MIMAT0045484
• Description: Tribolium castaneum tca-miR-11617a-5p mature miRNA
• Sequence: 17 - UGAGUUGGCAUAGGGUAGUACU - 38
• Evidence: experimental ; Illumina [1]

Mature tca-miR-11617a-4-3p

• Accession: MIMAT0045560
• Description: Tribolium castaneum tca-miR-11617a-4-3p mature miRNA
• Sequence: 56 - UAGUACUCCCUAGGGCAGCUUAU - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26518483
   MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "Genome Res (2016) 26:85-96