Stem-loop tca-mir-971b

Accession

MI0037413

Description

Tribolium castaneum tca-mir-971b precursor miRNA

Literature search

1 open access papers mention tca-mir-971b
(3 sentences)

Sequence

30752 reads, 213.0 reads per million, 31 experiments

agcuuugaguguguauagucggguCACUCUAAGUUUGAACACCAAGcuacauuuagcucguUUGGUGUUCUACCUUACAGUGAGcggacuguacaccaaaucaucacu
.....(((..((((((((((.(.(((((.((((...(((((((((((((....)))))....))))))))...)))).))))).).))))))))))....))).....

Structure

agcuu   --gu          g g     C    UUU        ----     c 
     uga    guguauaguc g uCACU UAAG   GAACACCA    AGcua a
     |||    |||||||||| | ||||| ||||   ||||||||    |||||  
     acu    cacaugucag c AGUGA AUUC   CUUGUGGU    ucgau u
ucacu   aaac          g G     C    CAU        Uugc     u 

Annotation confidence High

Genome context

ref|NC_007419.2|: 238953-239060 [+]

Mature tca-miR-971b-5p

• Accession: MIMAT0045561
• Description: Tribolium castaneum tca-miR-971b-5p mature miRNA
• Sequence: 25 - CACUCUAAGUUUGAACACCAAG - 46
• Evidence: experimental ; Illumina [1]

Mature tca-miR-971b-3p

• Accession: MIMAT0045562
• Description: Tribolium castaneum tca-miR-971b-3p mature miRNA
• Sequence: 62 - UUGGUGUUCUACCUUACAGUGAG - 84
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26518483
   MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "Genome Res (2016) 26:85-96