miRBase entry: tca-mir-3851q

Stem-loop tca-mir-3851q

Accession

MI0037416

Description

Tribolium castaneum tca-mir-3851q precursor miRNA

Sequence

auuuUGUGAGUACAUUUAGUUCUGAGUUGGCAUAgaguaguacuauguaaaauucuucuccaUUGUACGACCCAUGCUGGCCCAgugaaagauuucaauucacuaaca
.....((((((..((((....(((.((((((((.(.((.((((.(((.............))).)))).))).)))))))).)))....))))....)))))).....

Structure

auuuU      --AC    AGUU   A        A a  a    u   uaaaa 
     GUGAGU    AUUU    CUG GUUGGCAU g gu guac aug     u
     ||||||    ||||    ||| |||||||| | || |||| |||     u
     cacuua    uaga    gAC CGGUCGUA C CA CAUG Uac     c
acaau      acuu    aagu   C        C -  G    U   cucuu

Annotation confidence Not enough data

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Genome context

ChLG2: 2684812-2684919 [+]

Clustered miRNAs

21 other miRNAs are < 10 kb from tca-mir-3851q

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tca-miR-3851q-5p

Accession	MIMAT0045567
Description	Tribolium castaneum tca-miR-3851q-5p mature miRNA
Sequence	5 - UGUGAGUACAUUUAGUUCUGAGUUGGCAUA - 34
Evidence	experimental Illumina [1]

Mature tca-miR-3851q-3p

Accession	MIMAT0045568
Description	Tribolium castaneum tca-miR-3851q-3p mature miRNA
Sequence	63 - UUGUACGACCCAUGCUGGCCCA - 84
Evidence	experimental Illumina [1]

References

PubMed ID: 26518483
MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"Genome Res (2016) 26:85-96