miRBase entry: tca-mir-3851d-2

Stem-loop tca-mir-3851d-2

Accession

MI0037421

Description

Tribolium castaneum tca-mir-3851d-2 precursor miRNA

Sequence

aauuaaauuuaauauugAGUGCACAUGGGGUGGUACUGUGuaauuuuugacucaUAGUACGGCCCAUGUUGGCUCaguaauaaauuacauu
.....((((((.((((((((..(((((((.(.((((((((............)))))))).))))))))..)))))))).)))))).....

Structure

aauua      a        GC       G G        uaauu 
     aauuua uauugAGU  ACAUGGG U GUACUGUG     u
     |||||| ||||||||  ||||||| | ||||||||      
     uuaaau augaCUCG  UGUACCC G CAUGAUac     u
uuaca      a        GU       - G        ucagu

Annotation confidence Not enough data

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Genome context

ChLG6: 8930246-8930336 [-]

Clustered miRNAs

7 other miRNAs are < 10 kb from tca-mir-3851d-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tca-miR-3851d-3p

Accession	MIMAT0018779
Description	Tribolium castaneum tca-miR-3851d-3p mature miRNA
Sequence	55 - UAGUACGGCCCAUGUUGGCUC - 75
Evidence	experimental Illumina [2]

Mature tca-miR-3851d-2-5p

Accession	MIMAT0045576
Description	Tribolium castaneum tca-miR-3851d-2-5p mature miRNA
Sequence	18 - AGUGCACAUGGGGUGGUACUGUG - 40
Evidence	experimental Illumina [1]

References

PubMed ID: 26518483
MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"Genome Res (2016) 26:85-96