Stem-loop tca-mir-3851d-2

Accession

MI0037421

Description

Tribolium castaneum tca-mir-3851d-2 precursor miRNA

Sequence

264 reads, 28.0 reads per million, 29 experiments

aauuaaauuuaauauugAGUGCACAUGGGGUGGUACUGUGUaauuuuugacucaUAGUACGGCCCAUGUUGGCUCaguaauaaauuacauu
.....((((((.((((((((..(((((((.(.((((((((............)))))))).))))))))..)))))))).)))))).....

Structure

aauua      a        GC       G G        Uaauu 
     aauuua uauugAGU  ACAUGGG U GUACUGUG     u
     |||||| ||||||||  ||||||| | ||||||||      
     uuaaau augaCUCG  UGUACCC G CAUGAUac     u
uuaca      a        GU       - G        ucagu 

Annotation confidence High

Genome context

ref|NC_007421.3|: 9958019-9958109 [-]

Clustered miRNAs

7 other miRNAs are < 10 kb from tca-mir-3851d-2

Mature tca-miR-3851d-2-5p

• Accession: MIMAT0045576
• Description: Tribolium castaneum tca-miR-3851d-2-5p mature miRNA
• Sequence: 18 - AGUGCACAUGGGGUGGUACUGUGU - 41
• Evidence: experimental ; Illumina [1]

Mature tca-miR-3851d-3p

• Accession: MIMAT0018779
• Description: Tribolium castaneum tca-miR-3851d-3p mature miRNA
• Sequence: 55 - UAGUACGGCCCAUGUUGGCUC - 75
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 26518483
   MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "Genome Res (2016) 26:85-96