miRBase entry: tca-mir-3836g-1

Stem-loop tca-mir-3836g-1

Accession

MI0037425

Description

Tribolium castaneum tca-mir-3836g-1 precursor miRNA

Sequence

uuuuugaaaugucugucAGGUCUACCUCUGCUUAAGUUGAUAuuuauuuaauuaUCACUGGGCAAGGUAGACUCUacagccguuucuucaa
.....((((((.((((..(((((((((.((((((.((.((((..........)))))))))))))))))))))..)))).)))))).....

Structure

uuuuu      u    cA         C      A  U    uuua 
     gaaaug cugu  GGUCUACCU UGCUUA GU GAUA    u
     |||||| ||||  ||||||||| |||||| || ||||     
     cuuugc gaca  UCAGAUGGA ACGGGU CA CUau    u
aacuu      c    UC         -      -  -    uaau

Annotation confidence Not enough data

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Genome context

Unmapped58: 8038-8128 [-]

Clustered miRNAs

7 other miRNAs are < 10 kb from tca-mir-3836g-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tca-miR-3836g-5p

Accession	MIMAT0045583
Description	Tribolium castaneum tca-miR-3836g-5p mature miRNA
Sequence	18 - AGGUCUACCUCUGCUUAAGUUGAUA - 42
Evidence	experimental Illumina [1]

Mature tca-miR-3836g-3p

Accession	MIMAT0045584
Description	Tribolium castaneum tca-miR-3836g-3p mature miRNA
Sequence	55 - UCACUGGGCAAGGUAGACUCU - 75
Evidence	experimental Illumina [1]

References

PubMed ID: 26518483
MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"Genome Res (2016) 26:85-96