Stem-loop tca-mir-3851m-4

Accession

MI0037426

Description

Tribolium castaneum tca-mir-3851m-4 precursor miRNA

Sequence

65 reads, 8.0 reads per million, 16 experiments

uuaguacugGGUUGGCACAGAGUAGUACUAUguaaaauucuauuucaUAGUACGACCCGUGUCGGCCCAguaagag
....((((((((((((((.(.((.((((((((.(((......))))))))))).))).))))))))))))))....

Structure

uuag              A A  A        u   au 
    uacugGGUUGGCAC G GU GUACUAUg aaa  u
    |||||||||||||| | || |||||||| |||   
    augACCCGGCUGUG C CA CAUGAUac uuu  c
gaga              C -  G        -   au 

Annotation confidence Not enough data

Genome context

ref|NW_015450635.1|: 13133-13208 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from tca-mir-3851m-4

Mature tca-miR-3851m-5p

• Accession: MIMAT0045466
• Description: Tribolium castaneum tca-miR-3851m-5p mature miRNA
• Sequence: 10 - GGUUGGCACAGAGUAGUACUAU - 31
• Evidence: experimental ; Illumina [1]

Mature tca-miR-3851m-4-3p

• Accession: MIMAT0045585
• Description: Tribolium castaneum tca-miR-3851m-4-3p mature miRNA
• Sequence: 48 - UAGUACGACCCGUGUCGGCCCA - 69
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26518483
   MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "Genome Res (2016) 26:85-96