Stem-loop tca-mir-3851r

Accession

MI0037427

Description

Tribolium castaneum tca-mir-3851r precursor miRNA

Sequence

1866 reads, 131.0 reads per million, 34 experiments

uaguucugAGUUGGCAUAGAGUAGUACUauguaaaauuuuucuccaUAGUACGACCCAUGCCGGCccagugaaa
.....(((.((((((((.(.((.((((((((.............)))))))).))).)))))))).))).....

Structure

uaguu   A        A A  A        uaaaa 
     cug GUUGGCAU G GU GUACUaug     u
     ||| |||||||| | || ||||||||     u
     gac CGGCCGUA C CA CAUGAUac     u
aaagu   c        C -  G        cucuu 

Annotation confidence Medium

Genome context

ref|NW_015450635.1|: 4524-4597 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from tca-mir-3851r

Mature tca-miR-3851r-5p

• Accession: MIMAT0045586
• Description: Tribolium castaneum tca-miR-3851r-5p mature miRNA
• Sequence: 9 - AGUUGGCAUAGAGUAGUACU - 28
• Evidence: experimental ; Illumina [1]

Mature tca-miR-3851r-3p

• Accession: MIMAT0045587
• Description: Tribolium castaneum tca-miR-3851r-3p mature miRNA
• Sequence: 47 - UAGUACGACCCAUGCCGGC - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26518483
   MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "Genome Res (2016) 26:85-96