miRBase entry: tca-mir-11636

Stem-loop tca-mir-11636


Accession
MI0037432
Description
Tribolium castaneum tca-mir-11636 precursor miRNA


Sequence

6496 reads, 50.0 reads per million, 31 experiments
UGAGGUCUCGUUUGCUAAAUUUuaauuuaacaaaAUUUAGGAACAUGAUUCUCAGAc
(((((..((((((.(((((((((........))))))))).)).)))).)))))...

Structure
---     UC    -  G         aau 
   UGAGG  UCGU UU CUAAAUUUu   u
   |||||  |||| || |||||||||    
   ACUCU  AGUA AA GAUUUAaaa   u
cAG     -U    C  G         caa 


Annotation confidence High
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Genome context
ref|NC_007416.3|: 6593233-6593289 [+]
Clustered miRNAs
36 other miRNAs are < 10 kb from tca-mir-11636
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-11636-5p

Accession MIMAT0045591
Description Tribolium castaneum tca-miR-11636-5p mature miRNA
Sequence 1 - UGAGGUCUCGUUUGCUAAAUUU - 22
Evidence experimental
Illumina [1]

Mature tca-miR-11636-3p

Accession MIMAT0045592
Description Tribolium castaneum tca-miR-11636-3p mature miRNA
Sequence 35 - AUUUAGGAACAUGAUUCUCAGA - 56
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26518483
    MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "Genome Res (2016) 26:85-96