Stem-loop tca-mir-11617d-1

Accession

MI0037438

Description

Tribolium castaneum tca-mir-11617d-1 precursor miRNA

Sequence

495 reads, 30.0 reads per million, 30 experiments

AGUUGGCAUGGGUGGUACUAUauauaucauaguaauuaUAGUACUUUCUAUGGCAACUUa
(((((.((((((.(((((((((..(((....)))..))))))))).)))))).)))))..

Structure

--     G      U         ua   c 
  AGUUG CAUGGG GGUACUAUa  uau a
  ||||| |||||| |||||||||  |||  
  UCAAC GUAUCU UCAUGAUau  aug u
aU     G      U         ua   a 

Annotation confidence High

Genome context

ref|NC_007417.3|: 372275-372334 [+]

Clustered miRNAs

10 other miRNAs are < 10 kb from tca-mir-11617d-1

Mature tca-miR-11617d-5p

• Accession: MIMAT0045598
• Description: Tribolium castaneum tca-miR-11617d-5p mature miRNA
• Sequence: 1 - AGUUGGCAUGGGUGGUACUAU - 21
• Evidence: experimental ; Illumina [1]

Mature tca-miR-11617d-3p

• Accession: MIMAT0053508
• Description: Tribolium castaneum tca-miR-11617d-3p mature miRNA
• Sequence: 39 - UAGUACUUUCUAUGGCAACUU - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26518483
   MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "Genome Res (2016) 26:85-96