miRBase entry: tca-mir-3836i-1

Stem-loop tca-mir-3836i-1

Accession

MI0037441

Description

Tribolium castaneum tca-mir-3836i-1 precursor miRNA

Sequence

CGGUCUAUCUUUGUUUAGACUGauauuuauuuaauuaUCACUGGGCAAAGUGGAUCUUGc
.((((((.((((((((((..(((((..........)))))))))))))))))))))....

Structure

---C      U          AC     uuua 
    GGUCUA CUUUGUUUAG  UGaua    u
    |||||| ||||||||||  |||||     
    CUAGGU GAAACGGGUC  ACUau    u
cGUU      -          --     uaau

Annotation confidence Not enough data

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Genome context

ChLG2: 2683595-2683654 [+]

Clustered miRNAs

21 other miRNAs are < 10 kb from tca-mir-3836i-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tca-miR-3836i-5p

Accession	MIMAT0045601
Description	Tribolium castaneum tca-miR-3836i-5p mature miRNA
Sequence	1 - CGGUCUAUCUUUGUUUAGACUG - 22
Evidence	experimental Illumina [1]

Mature tca-miR-3836i-3p

Accession	MIMAT0045602
Description	Tribolium castaneum tca-miR-3836i-3p mature miRNA
Sequence	38 - UCACUGGGCAAAGUGGAUCUUG - 59
Evidence	experimental Illumina [1]

References

PubMed ID: 26518483
MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"Genome Res (2016) 26:85-96