Stem-loop tca-mir-11642

Accession

MI0037447

Description

Tribolium castaneum tca-mir-11642 precursor miRNA

Sequence

UGGAAACAUUUGAUCGUACCAUGuuucaguuucaauCAUGGUACGAUUGAUGUUGCCUUa
.((.((((((.((((((((((((.............)))))))))))))))))).))...

Structure

--U  A      U            uuuca 
   GG AACAUU GAUCGUACCAUG     g
   || |||||| ||||||||||||     u
   CC UUGUAG UUAGCAUGGUAC     u
aUU  G      -            uaacu 

Annotation confidence Not enough data

Genome context

ChLG6: 272831-272890 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from tca-mir-11642

Mature tca-miR-11642-5p

• Accession: MIMAT0045606
• Description: Tribolium castaneum tca-miR-11642-5p mature miRNA
• Sequence: 1 - UGGAAACAUUUGAUCGUACCAUG - 23
• Evidence: experimental ; Illumina [1]

Mature tca-miR-11642-3p

• Accession: MIMAT0045607
• Description: Tribolium castaneum tca-miR-11642-3p mature miRNA
• Sequence: 37 - CAUGGUACGAUUGAUGUUGCCUU - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26518483
   MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "Genome Res (2016) 26:85-96