miRBase entry: tca-mir-927c

Stem-loop tca-mir-927c

Accession

MI0037453

Description

Tribolium castaneum tca-mir-927c precursor miRNA

Sequence

UUCAGAAUCCAAACGCUUUGccagccuuucacacGGUAAAGCGUAGGAAUUCUAAAccg
...(((((((..((((((((((............)))))))))).)).)))))......

Structure

---UUC     -  AA          agccu 
      AGAAU CC  ACGCUUUGcc     u
      ||||| ||  ||||||||||      
      UCUUA GG  UGCGAAAUGG     u
gccAAA     A  -A          cacac

Annotation confidence Not enough data

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Genome context

ChLG9: 11531399-11531457 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from tca-mir-927c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tca-miR-927c-5p

Accession	MIMAT0045616
Description	Tribolium castaneum tca-miR-927c-5p mature miRNA
Sequence	1 - UUCAGAAUCCAAACGCUUUG - 20
Evidence	experimental Illumina [1]

Mature tca-miR-927c-3p

Accession	MIMAT0045617
Description	Tribolium castaneum tca-miR-927c-3p mature miRNA
Sequence	35 - GGUAAAGCGUAGGAAUUCUAAA - 56
Evidence	experimental Illumina [1]

References

PubMed ID: 26518483
MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"Genome Res (2016) 26:85-96