Stem-loop tca-mir-11646

Accession

MI0037455

Description

Tribolium castaneum tca-mir-11646 precursor miRNA

Sequence

113 reads, 9.0 reads per million, 25 experiments

CCAUGUUUGACUCCACCUCCAACCGcgaccacauccaaaaccaccaggaccaugggggugucgcuuguaUAGAGAAAGAGGAAACAUGAUUU
.(((((((..(((...(((..((.(((((.((.((((...((....))....)))).)))))))..))...)))...))).)))))))....

Structure

---C       GA   CAC   -CA  -C     c  a    -aaa  a 
    CAUGUUU  CUC   CUC   AC  Gcgac ac ucca    cc c
    |||||||  |||   |||   ||  ||||| || ||||    ||  
    GUACAAA  GAG   GAG   ug  cgcug ug gggu    gg c
UUUA       -G   AAA   AUa  uu     -  g    acca  a 

Annotation confidence Medium

Genome context

ref|NW_015451780.1|: 36475-36566 [-]

Mature tca-miR-11646-5p

• Accession: MIMAT0045619
• Description: Tribolium castaneum tca-miR-11646-5p mature miRNA
• Sequence: 1 - CCAUGUUUGACUCCACCUCCAACCG - 25
• Evidence: experimental ; Illumina [1]

Mature tca-miR-11646-3p

• Accession: MIMAT0045620
• Description: Tribolium castaneum tca-miR-11646-3p mature miRNA
• Sequence: 70 - UAGAGAAAGAGGAAACAUGAUUU - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26518483
   MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "Genome Res (2016) 26:85-96