Stem-loop tca-mir-11617d-2

Accession

MI0037459

Description

Tribolium castaneum tca-mir-11617d-2 precursor miRNA

Sequence

493 reads, 29.0 reads per million, 31 experiments

AGUUGGCAUGGGUGGUACUAUauagaucauaguaauuaUAGUACUUUCUAUGGCAACUUa
(((((.((((((.(((((((((..............))))))))).)))))).)))))..

Structure

--     G      U         uagauc 
  AGUUG CAUGGG GGUACUAUa      a
  ||||| |||||| |||||||||       
  UCAAC GUAUCU UCAUGAUau      u
aU     G      U         uaauga 

Annotation confidence High

Genome context

ref|NW_015450993.1|: 9815-9874 [-]

Clustered miRNAs

9 other miRNAs are < 10 kb from tca-mir-11617d-2

Mature tca-miR-11617d-5p

• Accession: MIMAT0045598
• Description: Tribolium castaneum tca-miR-11617d-5p mature miRNA
• Sequence: 1 - AGUUGGCAUGGGUGGUACUAU - 21
• Evidence: experimental ; Illumina [1]

Mature tca-miR-11617d-3p

• Accession: MIMAT0053508
• Description: Tribolium castaneum tca-miR-11617d-3p mature miRNA
• Sequence: 39 - UAGUACUUUCUAUGGCAACUU - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26518483
   MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "Genome Res (2016) 26:85-96