miRBase entry: tca-mir-11649

Stem-loop tca-mir-11649


Accession
MI0037462
Description
Tribolium castaneum tca-mir-11649 precursor miRNA


Sequence

82 reads, 18.0 reads per million, 14 experiments
cggccggucgcaggccagaaauuauaccguugagagaUUUCUGCCUUUGACGGGUUCGCUu
.((((.((((.((((.(((((((............))))))))))).)))).)))).....

Structure
----c    g    c    c       auacc 
     ggcc gucg aggc agaaauu     g
     |||| |||| |||| |||||||      
     UUGG CAGU UCCG UCUUUag     u
uUCGC    G    U    -       agagu 


Annotation confidence Not enough data
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Genome context
ref|NC_007419.2|: 7128351-7128411 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from tca-mir-11649
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-11649-3p

Accession MIMAT0045627
Description Tribolium castaneum tca-miR-11649-3p mature miRNA
Sequence 38 - UUUCUGCCUUUGACGGGUUCGCU - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26518483
    MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "Genome Res (2016) 26:85-96