miRBase entry: tca-mir-11618a-5

Stem-loop tca-mir-11618a-5

Accession

MI0037639

Description

Tribolium castaneum tca-mir-11618a-5 precursor miRNA

Sequence

auguuuucgauaaauAGUUAGCAUUGGUCGUUUCUAUGcuucuucguggucaUUGAUCGGCCAAUGUUCGCUUUauuucgaauccuc
..(..(((((.....(((.(((((((((((..((.(((((.......)).))).)).))))))))))).))).....)))))..)..

Structure

au uu     uaaau   U           UU  U   -  uc 
  g  uucga     AGU AGCAUUGGUCG  UC AUG cu  u
  |  |||||     ||| |||||||||||  || ||| ||  u
  c  aagcu     UCG UUGUAACCGGC  AG Uac gg  c
cu cu     uuaUU   C           -U  U   u  ug

Annotation confidence Not enough data

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Genome context

Unmapped58: 24542-24628 [+]

Clustered miRNAs

9 other miRNAs are < 10 kb from tca-mir-11618a-5

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tca-miR-11618a-5p

Accession	MIMAT0045489
Description	Tribolium castaneum tca-miR-11618a-5p mature miRNA
Sequence	16 - AGUUAGCAUUGGUCGUUUCUAUG - 38
Evidence	experimental Illumina [1]

Mature tca-miR-11618a-5-3p

Accession	MIMAT0045966
Description	Tribolium castaneum tca-miR-11618a-5-3p mature miRNA
Sequence	53 - UUGAUCGGCCAAUGUUCGCUUU - 74
Evidence	experimental Illumina [1]

References

PubMed ID: 26518483
MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"Genome Res (2016) 26:85-96