miRBase entry: tca-mir-3851l-4

Stem-loop tca-mir-3851l-4


Accession
MI0037641
Description
Tribolium castaneum tca-mir-3851l-4 precursor miRNA


Sequence

13939 reads, 1041.0 reads per million, 29 experiments
GGUUGGCAUAAGGUGGUACCauguaacauuuuaacccaUAGUACGAUCCAUGCCGACUCAg
(((((((((..(((.((((.(((.............))).)))).))).)))))))))...

Structure
---         AA   G    C   uaaca 
   GGUUGGCAU  GGU GUAC aug     u
   |||||||||  ||| |||| |||     u
   UCAGCCGUA  CUA CAUG Uac     u
gAC         -C   G    A   ccaau 


Annotation confidence Not enough data
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Genome context
ref|NW_015450635.1|: 8276-8336 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from tca-mir-3851l-4
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-3851l-5p

Accession MIMAT0045476
Description Tribolium castaneum tca-miR-3851l-5p mature miRNA
Sequence 1 - GGUUGGCAUAAGGUGGUACC - 20
Evidence experimental
Illumina [1]

Mature tca-miR-3851l-4-3p

Accession MIMAT0045967
Description Tribolium castaneum tca-miR-3851l-4-3p mature miRNA
Sequence 39 - UAGUACGAUCCAUGCCGACUCA - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26518483
    MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "Genome Res (2016) 26:85-96