Stem-loop aae-mir-11896

Accession

MI0037935

Description

Aedes aegypti aae-mir-11896 precursor miRNA

Sequence

1202 reads, 9.0 reads per million, 77 experiments

accuCGGUCAAUCCGGAACUGUUGGCUcggcacaaaagcgacCACAAGGCCGGAUUGAUCAAGAgu
..((((((((((((((..((..(((.(((.........))))))..)).)))))))))))..))).

Structure

ac   --           AA  GU   C   gca 
  cuC  GGUCAAUCCGG  CU  UGG Ucg   c
  |||  |||||||||||  ||  ||| |||   a
  gAG  CUAGUUAGGCC  GA  ACc agc   a
-u   AA           -G  AC   -   gaa 

Annotation confidence Medium

Genome context

ref|NW_001811263.1|: 1745834-1745899 [+]

Mature aae-miR-11896-5p

• Accession: MIMAT0061503
• Description: Aedes aegypti aae-miR-11896-5p mature miRNA
• Sequence: 5 - CGGUCAAUCCGGAACUGUUGGCU - 27
• Evidence: experimental ; Illumina [1]

Mature aly-miR4231-5p

• Accession: MIMAT0017919
• Description: Aedes aegypti aly-miR4231-5p mature miRNA
• Sequence: 5 - CGGUCAAUCCGGAACUGUUGGCU - 27
• Evidence: experimental ; SOLiD [1]

Mature aae-miR-11896-3p

• Accession: MIMAT0045994
• Description: Aedes aegypti aae-miR-11896-3p mature miRNA
• Sequence: 43 - CACAAGGCCGGAUUGAUCAAGA - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26914027
   Small RNA Profiling in Dengue Virus 2-Infected Aedes Mosquito Cells Reveals Viral piRNAs and Novel Host miRNAs
   Miesen P, Ivens A, Buck AH, van Rij RP
   PLoS Negl Trop Dis (2016) 10:e0004452