Stem-loop gmo-mir-133a-1

Accession

MI0037980

Description

Gadus morhua gmo-mir-133a-1 precursor miRNA

Literature search

1 open access papers mention gmo-mir-133a-1
(2 sentences)

Sequence

AGCUGGUAAAAUGGAACCAAAUcaccucuugaauggauUUGGUCCCCUUCAACCAGCUGU
(((((((..((.((.((((((((............)))))))).)).))..)))))))..

Structure

--       AA  U  A        accuc 
  AGCUGGU  AA GG ACCAAAUc     u
  |||||||  || || ||||||||      
  UCGACCA  UU CC UGGUUuag     u
UG       AC  C  C        guaag 

Annotation confidence Not enough data

Genome context

HE566612.1: 109176-109235 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gmo-mir-133a-1

Mature gmo-miR-133a-5p

• Accession: MIMAT0046029
• Description: Gadus morhua gmo-miR-133a-5p mature miRNA
• Sequence: 1 - AGCUGGUAAAAUGGAACCAAAU - 22
• Evidence: experimental ; Illumina [1]

Mature gmo-miR-133a-3p

• Accession: MIMAT0046030
• Description: Gadus morhua gmo-miR-133a-3p mature miRNA
• Sequence: 39 - UUGGUCCCCUUCAACCAGCUGU - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 27128807
   Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
   Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
   PLoS One (2016) 11:e0153324