Stem-loop pte-mir-275

Accession

MI0038029

Description

Parasteatoda tepidariorum pte-mir-275 precursor miRNA

Literature search

1 open access papers mention pte-mir-275
(2 sentences)

Sequence

ACGUGCUGCAUCAGGUGCUUGUGACUgcgcccuuucagauaagUCAGGUACCUGAAGUAGCGCGCGGA
.((((((((.(((((((((..(((((...............)))))))))))))).))))))))....

Structure

---A        A         UG     gcgccc 
    CGUGCUGC UCAGGUGCU  UGACU      u
    |||||||| |||||||||  |||||      u
    GCGCGAUG AGUCCAUGG  ACUga      u
AGGC        A         --     auagac 

Annotation confidence Not enough data

Genome context

Scf5bK3_1778: 109272-109339 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pte-mir-275

Mature pte-miR-275-5p

• Accession: MIMAT0046111
• Description: Parasteatoda tepidariorum pte-miR-275-5p mature miRNA
• Sequence: 1 - ACGUGCUGCAUCAGGUGCUUGUGACU - 26
• Evidence: experimental ; Illumina [1]

Mature pte-miR-275-3p

• Accession: MIMAT0046112
• Description: Parasteatoda tepidariorum pte-miR-275-3p mature miRNA
• Sequence: 44 - UCAGGUACCUGAAGUAGCGCGCGGA - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 27324919
   Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum
   Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP
   Genome Biol Evol (2016) 8:2133-2144